cleanHDX.RdFunction that checks a hdx-ms dataset for correct formatting and will clean up the dataset if specified
cleanHDX(res, clean = TRUE)An object of class DataFrame containing the results of the hdx-ms experiment
If TRUE will filter multiple charge states and remove missing values
Returns a cleaned DataFrame
data("BRD4_apo")
BRD4_apo <- DataFrame(BRD4_apo)
cleanHDX(res = BRD4_apo, clean = TRUE)
#> DataFrame with 1728 rows and 10 columns
#> DeutTime Charge State Exposure Start End
#> <character> <integer> <character> <numeric> <integer> <integer>
#> 1 0s 3 BRD4 0 1 26
#> 2 0s 3 BRD4 0 1 26
#> 3 0s 3 BRD4 0 1 26
#> 4 15.00s 3 BRD4 15 1 26
#> 5 15.00s 3 BRD4 15 1 26
#> ... ... ... ... ... ... ...
#> 1724 3600.00s 1 BRD4 3600 468 477
#> 1725 3600.00s 1 BRD4 3600 468 477
#> 1726 14400.00s 1 BRD4 14400 468 477
#> 1727 14400.00s 1 BRD4 14400 468 477
#> 1728 14400.00s 1 BRD4 14400 468 477
#> Sequence Uptake replicate MaxUptake
#> <character> <numeric> <integer> <numeric>
#> 1 MSAESGPGTRLRNLPVMGDG.. 0.0000 1 22
#> 2 MSAESGPGTRLRNLPVMGDG.. 0.0000 2 22
#> 3 MSAESGPGTRLRNLPVMGDG.. 0.0000 3 22
#> 4 MSAESGPGTRLRNLPVMGDG.. 20.7989 1 22
#> 5 MSAESGPGTRLRNLPVMGDG.. 20.6973 2 22
#> ... ... ... ... ...
#> 1724 VSSPAVPPPT 3.78211 2 4
#> 1725 VSSPAVPPPT 3.76693 3 4
#> 1726 VSSPAVPPPT 3.78625 1 4
#> 1727 VSSPAVPPPT 3.75727 2 4
#> 1728 VSSPAVPPPT 3.81936 3 4