reversibleJumpBreakPointsAdd.Rd
Reversible jump step for adding the breakpoints
reversibleJumpBreakPointsAdd(
res,
currentSigma,
currentb,
currentpi,
currentbp,
currentq,
currentd,
shape = 1,
rate = 5,
logmean = 0,
logsd = 1,
shape1 = 1,
shape2 = 5,
pishape1 = 1,
pishape2 = 1,
dshape = 1,
drate = 1,
K,
R,
rho,
lambda,
multivariate = FALSE,
cormat = NULL,
timepoints = timepoints,
tCoef,
index,
numExch,
density,
R_lower,
R_upper,
phi
)
data frame of uptake data
numeric current variance parameter
numeric vector of current rate parameters
numeric vector of current mixing parameters
numeric vector of current breakpoints
numeric vector of current stretch parameters
numeric vector of current rate parameters
numeric shape parameter of the prior gamma distribution
numeric rate parameter of the prior gamma distribution
numeric mean of the prior lognormal distribution
numeric standard deviation of the prior lognormal distribution
numeric shape parameter of the prior beta distribution
numeric shape parameter of the prior beta distribution
numeric shape parameter of the prior beta distribution
numeric shape parameter of the prior beta distribution
numeric shape parameter of the prior gamma distribution
numeric rate parameter of the prior gamma distribution
numeric number of breakpoints
numeric maximum value of the breakpoints
numeric probability of adding a breakpoint
numeric the mean number of break points
logical flag for multivariate model
numeric correlation matrix
numeric vector of time points
numeric vector of scaling variance of time points
list of indices for each peptide residues
list of number of exchangeable amides for each peptide
character string of density function
numeric lower bound of the breakpoints
numeric upper bound of the breakpoints
numeric maximum uptake possible
list of updated parameters